PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0308s0025.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 402aa    MW: 44572.8 Da    PI: 8.5904
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0308s0025.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.61.1e-3298202199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Kalax.0308s0025.2.p  98 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGv 187
                          89****************************66677899*************************************************666 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+ ++ +l++ ++r+
  Kalax.0308s0025.2.p 188 GEaEKHRLFIDWRRR 202
                          88899999*999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-4192203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-3095198IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-2596185No hitNo description
PROSITE profilePS5086314.57998203IPR003340B3 DNA binding domain
PfamPF023627.4E-3098202IPR003340B3 DNA binding domain
SMARTSM010193.9E-2498203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEYGSKDEEY NNSIRHDFPA YGSGSSRDWF ASNKFAAADD SSDIMEASPL TANENNYDHE  60
HVRRVSDSHQ QQQHYAQQQA LGIGIGGQIC NIEREHMFDK VVTPSDVGKL NRLVIPKQHA  120
EKYFPLDSSS NEKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI  180
VSFQRGVGEA EKHRLFIDWR RRPITTLPID GSPFYSQFHR SVGGTPSWSP LLLRPPPARV  240
HPSISFQIPN HPGSHLFSTG SSGNYMGQVF TNKTSVVYLT SPEGFGMVRG RAGGGIGERI  300
PVVIQSVPVV QGKKVEAAAK RLRLFGVNME CPASPDTSTS DEFEILSSSS GIPVSSTTPR  360
HHLSQLDPSS STLFLPSSTK MYNSTLVSNN GKMSKSLDLD I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-479521111126DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439872.11e-101PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_012439873.11e-101PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-74NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0D2Q2161e-101A0A0D2Q216_G
STRINGVIT_02s0025g03000.t012e-88(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-69B3 family protein